rs29545924 SNP Detail

Summary

• ID
  rs29545924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90907461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCGT GGCGCAGGGT GCCTGACCCA
  Y
  CCGGGCGGGC CATCGCAGTC AGCGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45833197	mCV23119059	ABI	CRAMUS_MOUSE	f	SNP		T					T	C
ss46597775	NES10447000	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C	C		C	C		T	C		T
ss148817086	ENSMUSSNP2136447	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss321608243	CHEV_5_91188628	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29545924					SNP	T	T	T	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46597775	NES10447000	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90907461 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16042	CpG island 16042	within coordinates
Cxcl5	C-X-C motif chemokine ligand 5	within coordinates
Gm72413	predicted gene, 72413	within coordinates
Rr614399	regulatory region 614399	1013 bp distal
Rr614400	regulatory region 614400	214 bp distal
Tssr47178	transcription start site region 47178	235 bp downstream