rs29546897 SNP Detail

Summary

• ID
  rs29546897
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:52520019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTGGCTT CTAGGGGACG
  CCACCTGAAG GAGGTTCACT GAGCTCCAGG AGGCACGCAG AGAACAGGTT ACCGAACAAA
  CTTCCCACCT GCCAGGCCTG GCGACTGGAG GTGTCAGGGG CCATTCTGTC TCTAGCTGTA
  CCACTGATGC TCGGTTATCT TCCTAAGTGT GTGAACCACA TGGGGCAGAA ACTTGTGCAG
  S
  TTGGAGACTC TGGTGTGTGG TGTGGTAGGG GGCAGGTACC CAATAACCAT TTGTCAAAGG
  AATTCAGGGG ACAGACAAGC GGCAGCAAGC TGGGGATGCT TCTCTGGGAA AGAGAGCCTT
  TTATTTCTAG AGAGTTTCTG TGATGGACAG GAGCTCCCAA CAACAAAAGA AATAAGGAGC
  CTGGGATTGG AGGTTCCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45830851	mCV25026705	ABI	CRAMUS_MOUSE	f	SNP	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29546897					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:52520019 () rs orientation: forward

Symbol	Name	Function Class
Rr611419	regulatory region 611419	1474 bp distal
Rr611420	regulatory region 611420	709 bp proximal
Rr611421	regulatory region 611421	1125 bp proximal
Sod3	superoxide dismutase 3, extracellular	1127 bp upstream
Tssr46168	transcription start site region 46168	1235 bp upstream
Tssr46169	transcription start site region 46169	1248 bp upstream
Tssr46170	transcription start site region 46170	1279 bp upstream