rs29547406 SNP Detail

Summary

• ID
  rs29547406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56285445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCTCATGT TGTGGTGACC CCCCCCCCAT TCCCAACCAT
  AACATGAGTC TCATTGCTAC TTCACAACTG CAAGTTTTCT ACTGCTATGA GTCATAGTGC
  R
  AATATCTGAC ACTCAGGATG GCTGATAGGT GAACCCTGGG AAAGGGTCAT TTGACTCCCA
  AGGGAGTCAT GACCCTCAGG TTCAGAAGCA TCGCCCTAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39089232	mCV23265135	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss149040889	ENSMUSSNP1584322	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss324346017	CHEV_13_56238993	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29547406					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56285445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5695	CpG island 5695	1587 bp distal
Rr480643	regulatory region 480643	1511 bp distal
Rr480644	regulatory region 480644	1810 bp proximal
Tssr122743	transcription start site region 122743	1977 bp upstream
Tssr122744	transcription start site region 122744	1964 bp upstream
Tssr122745	transcription start site region 122745	1944 bp upstream
Tssr122746	transcription start site region 122746	1822 bp upstream
Tssr122747	transcription start site region 122747	1784 bp upstream
Tssr122748	transcription start site region 122748	1717 bp upstream
Tssr122749	transcription start site region 122749	1676 bp upstream
Tssr122750	transcription start site region 122750	1545 bp upstream
Tssr122751	transcription start site region 122751	444 bp upstream
Tssr122752	transcription start site region 122752	966 bp downstream