rs29547469 SNP Detail

Summary

• ID
  rs29547469
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121421315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAG CTTTGCTTCC TGAGGGCTGA
  M
  TGGATTTGGG GCTGAGCATC TGCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45830764	mCV23785017	ABI	CRAMUS_MOUSE	f	SNP		A	C	C
ss149182209	ENSMUSSNP2235832	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss321668122	CHEV_5_121733261	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29547469					SNP	A	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121421315 () rs orientation: forward

Symbol	Name	Function Class
Gm73432	predicted gene, 73432	within coordinates
Hectd4	HECT domain E3 ubiquitin protein ligase 4	within coordinates
Rr108884	regulatory region 108884	515 bp distal
Rr120298	regulatory region 120298	1720 bp proximal
Tssr48564	transcription start site region 48564	405 bp upstream
Tssr48565	transcription start site region 48565	425 bp upstream