rs29548804 SNP Detail

Summary

• ID
  rs29548804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144036101 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCTCTGGGCT TGCAAGTTGC TAAAGTTCCA CCTGATAAGA TGCAAGGCAG CTCTTCAGGT
  GTTTTTATTC ACAAATTGGA CTCCCAGAGT CAGCAAAGGT GGTCTCCCCA ACCCCAAGGA
  AGGGGCTCAG AGCTGTGTTA CAGTCAAACA CTTTCTCCCT TTCTATTATG TGTGCATGGA
  TGTATGTGTT GTGTGCATGG ATGTATGTGT TGTGTGCATG GATGTATGTG TTGCTTGTGT
  TTGCATGTGA TTTGTTTATG TGTGTGCATT TTCTCCACCT GTCCCTGTGT ATGTATGTGT
  R
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGAAGGCC AGAAGAGTGT
  CTTTCCTCGG GGTCAGGGTC CACTTTTTGT TTTTGAGGCA GGGTCTCTTA TTGGCCCGAA
  ACTTACCTAG CAAGTTTGTC TGGCTTGTCA GCGAGTCCTA CGAGCCATCT TTTTTTCTGC
  CTCTTCAGCA AGCATTGTCC ACTAAGGTTA GATTTTCTTT ATGTGGATTT CTTGGGGATC
  AAATTCAGGC CCTCAAGCTT GCAAGGCAAG CAATCTCTTC ATTGCATTTG AGACATCTTC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss45832935	mCV23378246	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29548804					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144036101 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17002	CpG island 17002	893 bp proximal
Gm71407	predicted gene, 71407	1078 bp downstream
Gm71412	predicted gene, 71412	within coordinates
Lmtk2	lemur tyrosine kinase 2	1153 bp upstream
Rr111125	regulatory region 111125	500 bp proximal
Rr124743	regulatory region 124743	499 bp proximal
Rr399492	regulatory region 399492	721 bp upstream
Tssr49686	transcription start site region 49686	1070 bp upstream
Tssr49687	transcription start site region 49687	1104 bp upstream