rs29548950 SNP Detail

Summary

• ID
  rs29548950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:100597187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTAGCTG ACACACCTAC
  ACAGCCATCC GACTGCCAGA AATGTGCCAC AGCCAGGACT ACCAGACCCA GCTTACTCGC
  TTTAAAATTA GTTTTATTAT TGAGTTACAA TAATTTTCTT ATATTTTAAA TATGTCAGTA
  CTTTGTCAGA TATTTACAAT ACATATTTAG TGTGACTTAA TTTTAACATC GTGTCTCTGT
  S
  TGTGTGTGTG TGTGTGTTCA TGTCCTAAAA CCCACATAAA AACACTGGGT GTGGTGCACA
  CAGCCAAAAC TCTAGTTTGG GGAAGGCTGG GGATTCCTAG GATAACTGTT CAACCATTTT
  AACCTCATTA ATGATTTCCA AGCCAATAAA AGACCCTGTT TCAAAGAATA ACTTCCAAAA
  AAATTATTAT TGTCCTCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39088956	mCV24922250	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss145089844	ENSMUSSNP1952802	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29548950					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100597187 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gtf2h2	general transcription factor II H, polypeptide 2			Intron
				Noncoding-Transcript-Variant