rs29548969 SNP Detail

Summary

• ID
  rs29548969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:61964540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAT CTAGGAAAAA TCAAGCAAAA
  Y
  GGTGGTAGTA GATTCTTGCC TAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45832652	mCV23377795	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss148545833	ENSMUSSNP5604220	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321556038	CHEV_5_62198436	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs29548969					SNP	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:61964540 () rs orientation: forward

Symbol	Name	Function Class
G6pd2	glucose-6-phosphate dehydrogenase 2	1646 bp upstream
Gm73520	predicted gene, 73520	7 bp downstream
Tssr46354	transcription start site region 46354	482 bp downstream
Tssr46355	transcription start site region 46355	461 bp downstream
Tssr46356	transcription start site region 46356	447 bp downstream