rs29549145 SNP Detail

Summary

• ID
  rs29549145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134294959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAAAATGAGA GGGAACCATT TTCAGTAAAT AGGGCAGCTT GGCACTCTAC TCTCTAGAGC
  AGACAACCTA TCTATCAGCC CACCTCAGTC GGGGTTTTTT CCTGCCTCCC CAAGGGTCTT
  TCCTTTTTCT GTGTTTCTTG GGAACAGCTG GAGACTGAAG GACATTTGAA ACTTGTTTTT
  AGAACAGTAC CCAGCCCGCC TCTTTGGAGC TTTTAAACTT CTGAAGATAG GCAATCAGAT
  AAGACTGGTC CAATTAGGCA CTACAAAACA GCAGCAAAAA AAAAAAAAAA AAAAAAAAAA
  R
  AAAGAGAGAG AGGGAGGCCT ACACAGGCCC TCTGGGACAC CCTCTGAAGC CTGTTAGCTG
  CAGAAAGGCA AGGCTTTATT GGGAGGTGGC TGCAACTTCC ACAGGATGCT AAAAAAATTA
  AACTCACATA CACACAAACT CCAACTAGCA GAGCACTGGT CTACATCTCT CTCAACTGGA
  ACAAAACAAA GACAATTTCA AACTATGGAT ACAAATCTAA CACCCCTGTA TTTACTCGGT
  CCCTTAGAAT ACATGGGCAA CAGAGTAATA CTGAAAACCA AGGCACTTCC TTGTAAAATG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45832837	mCV23024592	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29549145					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134294959 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	960 bp downstream
Gtf2i	general transcription factor II I	within coordinates
Tssr53619	transcription start site region 53619	1672 bp upstream
Tssr53620	transcription start site region 53620	27 bp upstream
Tssr53621	transcription start site region 53621	479 bp downstream