rs29549158 SNP Detail

Summary

• ID
  rs29549158
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:114294166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA ACTGTTGAGA TCTGGTTTTG
  Y
  TGTCCTTTCT GAAAGGCACA CAGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss45831075	mCV24686151	ABI	CRAMUS_MOUSE	f	SNP		T						C
ss60825943	NES16029815	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C	C	C	C	C		C	C	C		C
ss149107462	ENSMUSSNP4520767	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
ss321652051	CHEV_5_114606114	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs29549158					SNP	T	T	T	T	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60825943	NES16029815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:114294166 () rs orientation: forward

Symbol	Name	Function Class
Acacb	acetyl-Coenzyme A carboxylase beta	within coordinates
Rr108154	regulatory region 108154	966 bp distal
Rr108155	regulatory region 108155	1235 bp proximal
Rr120008	regulatory region 120008	768 bp proximal
Rr120009	regulatory region 120009	1140 bp proximal
Tssr48071	transcription start site region 48071	672 bp downstream
Tssr48072	transcription start site region 48072	638 bp downstream
Tssr48073	transcription start site region 48073	590 bp downstream