rs29549254 SNP Detail

Summary

• ID
  rs29549254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134294707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTAA ATAGGGCAGC TTGGCACTCT
  R
  CTCTCTAGAG CAGACAACCT ATCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45834028	mCV23024596	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss144502824	ENSMUSSNP5727754	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
ss321695275	CHEV_5_134741723	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29549254					SNP	A	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134294707 () rs orientation: forward

Symbol	Name	Function Class
Gm43481	predicted gene 43481	1212 bp downstream
Gtf2i	general transcription factor II I	within coordinates
Tssr53619	transcription start site region 53619	1420 bp upstream
Tssr53620	transcription start site region 53620	224 bp downstream
Tssr53621	transcription start site region 53621	731 bp downstream