rs29549332 SNP Detail

Summary

• ID
  rs29549332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123648440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATGTTGAGC CCTGCCAAGA AGGTGGCAGG AGGCAGGTAA
  GGGCTGGCAG GGCCGATGAT TTAAGTCTCT TCTCCAGGAA ACACCTCTGC GGAGTGGCTC
  R
  TGCCCAGCTC TTGGAGAGGC TGAGGTGAGA GACTTGTCAC TGGTTCAAGG CTAGGCTGGC
  CTAATCAAAA ATGAAAACCA AAAGTCCCAG AATTGGGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45831767	mCV24599480	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss149195320	ENSMUSSNP4233437	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321670960	CHEV_5_123960386	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29549332					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123648440 () rs orientation: forward

Symbol	Name	Function Class
B3gnt4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	83 bp upstream
Cpgi16587	CpG island 16587	1365 bp distal
Diablo	diablo, IAP-binding mitochondrial protein	within coordinates
Gm15751	predicted gene 15751	within coordinates
Gm49027	predicted gene, 49027	1705 bp downstream
Rr620213	regulatory region 620213	1972 bp distal
Rr620215	regulatory region 620215	988 bp distal
Rr620216	regulatory region 620216	1811 bp proximal
Tssr48799	transcription start site region 48799	1886 bp downstream