rs29549510 SNP Detail

Summary

• ID
  rs29549510
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47258235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAATGACA CGCTCCCATA AGGTCTTAGA GCACATACCA
  CTTCAAATAA TAAGTATGCC TTGTCCTCTT AACCTAGATG GTATTTATAA AAAAAAAAAA
  R
  AAGAAAGAAA AGAAAGAAAA GAAAAGAAAT GACAGTTTGG GAAGAGCACT TTAACCTTTA
  GGCCTGCTCC CAAGTCTGGC TGAGCTGTGG CCATCTGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39090326	mCV25274258	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss324335496	CHEV_13_47200127	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29549510					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47258235 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	1587 bp upstream
Cpgi5551	CpG island 5551	559 bp proximal
Dek	DEK proto-oncogene	within coordinates
Rr479039	regulatory region 479039	1421 bp proximal
Rr479040	regulatory region 479040	1678 bp proximal
Tssr119626	transcription start site region 119626	813 bp upstream
Tssr119627	transcription start site region 119627	1642 bp upstream
Tssr119628	transcription start site region 119628	1654 bp upstream
Tssr122369	transcription start site region 122369	615 bp downstream
Tssr122370	transcription start site region 122370	762 bp downstream
Tssr122371	transcription start site region 122371	849 bp downstream
Tssr122372	transcription start site region 122372	925 bp downstream
Tssr122373	transcription start site region 122373	974 bp downstream
Tssr122374	transcription start site region 122374	1031 bp downstream
Tssr122375	transcription start site region 122375	1342 bp downstream
Tssr122376	transcription start site region 122376	1360 bp downstream
Tssr122377	transcription start site region 122377	1385 bp downstream
Tssr122378	transcription start site region 122378	1417 bp downstream
Tssr122379	transcription start site region 122379	1450 bp downstream
Tssr122380	transcription start site region 122380	1463 bp downstream