rs29550014 SNP Detail

Summary

• ID
  rs29550014
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24532758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCCACCCA CCCTGAGAAT TCTCTGGCAG ACCTCTGAGT
  CAGCTAGAAT CCCTTCCTCA GCCCCTCTAG CCTTGACCAT TCCATGCCTG CAGCAAGACC
  Y
  GAAGCCTTCC CCAACCCCAG AGTTTTTAGC CCTGTCCCAG AAGTCCTGAG TCCCAGGCTC
  CATAACCACA GGTCTCTGGG CTCAGTGAAG TCCTAAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45831177	mCV25226693	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	T
ss148091629	ENSMUSSNP205846	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs29550014					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24532758 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15591	CpG island 15591	1795 bp distal
Cpgi15592	CpG island 15592	1802 bp proximal
Gm15589	predicted gene 15589	within coordinates
Kcnh2	potassium voltage-gated channel, subfamily H (eag-related), member 2	within coordinates
Rr112277	regulatory region 112277	558 bp distal
Rr124919	regulatory region 124919	1042 bp proximal
Tssr50305	transcription start site region 50305	1511 bp downstream
Tssr50306	transcription start site region 50306	1796 bp downstream