rs29550478 SNP Detail

Summary

• ID
  rs29550478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36068724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTATGGG GAAGTGACTT CAAGTCACCC CACGCTTGCC
  ACAGAGGTCC AAAGGCCTAA CAAGGACCAC TCAGGGAGGA GATTGAAAGG GAGCTAAGAT
  Y
  CTAGAAAATT CTGAATGAAA GCAACAGTTG CAAGCCAGAA TAGATTTGCT CACATCAGCT
  GATTGTTCAT TGACTGTCTT GGGTTCTGGC AGGAACACT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39087975	mCV25233683	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss148866487	ENSMUSSNP1901802	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss324315037	CHEV_13_35976610	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29550478					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36068724 () rs orientation: forward

Symbol	Name	Function Class
Rr271493	regulatory region 271493	1124 bp distal
Rr271494	regulatory region 271494	77 bp proximal
Rr271495	regulatory region 271495	1477 bp proximal
Rr283230	regulatory region 283230	within coordinates