rs29550697 SNP Detail

Summary

• ID
  rs29550697
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151353343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTCTAGT GAGCACCTAG
  GGGTAGATGA AAGACAGAGA CAGGCAAAAC TGGAATATAA TAGTTGAACA AGGAGACCTG
  AATTCAAGTG CCAGTTCTGG TTGTACAATC AACATTCAGT CTAGGAATGT CTTAAGGTCT
  CTCCAGGTTG ATTTCTCTTT CTGTTTCTAA GAATGAAGAA GTGAGGCTTA TTTAATGATG
  K
  AAAATTAGAT GCTTTCAGAA GTTTCGGGTG TAACTCACTA GGAGGTAGGT GCTCAGGGGA
  GCCTAGAGGC CACATGATCC ACATATTTTA TAAGGAGACA AGAATTGAGA TTTTTCTGCA
  AAATTTTATA TGTGAGCAGC TTACTTGAAA TATTTAAAAG AAAACACCAC CAATGCCAAA
  TAAACTATGT TTACAGGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45833549	mCV23844885	ABI	CRAMUS_MOUSE	f	SNP	G	T			T	T
ss60861242	NES15995642	PERLEGEN	MM_PANEL2	f	SNP		T	T	T		T	T	T	G		T	T	G	T
ss144728591	ENSMUSSNP1519279	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T				T				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29550697					SNP	G	T	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861242	NES15995642	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151353343 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	1668 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	1715 bp upstream
Rr378823	regulatory region 378823	within coordinates
Tssr54686	transcription start site region 54686	1716 bp upstream
Tssr54687	transcription start site region 54687	1691 bp upstream