rs29550996 SNP Detail

Summary

• ID
  rs29550996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92489013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA GCACTTAAGA GGCAAAGGCA
  R
  GTGGATTTCT GAGTTCGAGG CCAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39088376	mCV23769165	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss144934141	ENSMUSSNP4754838	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
ss324480468	CHEV_13_93122460	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29550996					SNP	A	A	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92489013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5933	CpG island 5933	1868 bp proximal
Msh3	mutS homolog 3	within coordinates
Rr403895	regulatory region 403895	1439 bp downstream
Rr403896	regulatory region 403896	1995 bp upstream
Rr483661	regulatory region 483661	1731 bp proximal
Tssr123429	transcription start site region 123429	1998 bp downstream