rs29551036 SNP Detail

Summary

• ID
  rs29551036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:36918710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAAGTAC AGCCTCACGC
  CCACGAGCAG GCCTGACGTG GGGGATGACA CGGATTGATT TTTTTTTTTT TTTATAATAT
  AGACACCTTG GTAGAGAATC ACCATTTATA GTCATAAGAC TCTGGAATTA ATCAGATATC
  TCCAATTAAT GTGCGATCTC AACGAAATCT CGCCTCTCTG TAGTGACTGA TTTTCATCCC
  R
  GTGGCCACCC CCGCCTCCTC GTTCCAGGGG CCCCCAGCCC CGCCCCCTCC CTGCGCAGAA
  TCGGGGCTCC CTCTCCTCTC CCCGCCCCGG AGACGGGGAG TCCTGGTGCG CCCACTCGAT
  TGTTCAACCT GCTCCCTCCT TCACTGGCGC CACAACGAAC CCAGACACTT CCAACCCTGC
  AGAGAGGTTT GGGGAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss39088575	mCV24792177	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss148879327	ENSMUSSNP4413631	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29551036					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36918710 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5451	CpG island 5451	75 bp proximal
Cpgi5452	CpG island 5452	1179 bp proximal
Gm56572	predicted gene, 56572	152 bp upstream
Nrn1	neuritin 1	Intron
Rr477394	regulatory region 477394	270 bp distal
Rr477395	regulatory region 477395	within coordinates
Rr477396	regulatory region 477396	163 bp proximal
Tssr119271	transcription start site region 119271	120 bp upstream
Tssr122097	transcription start site region 122097	461 bp upstream
Tssr122098	transcription start site region 122098	428 bp upstream
Tssr122099	transcription start site region 122099	351 bp upstream
Tssr122100	transcription start site region 122100	321 bp upstream
Tssr122101	transcription start site region 122101	289 bp upstream
Tssr122102	transcription start site region 122102	244 bp upstream