rs29551173 SNP Detail

Summary

• ID
  rs29551173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100657079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATCACTGGGT AAGATTATAT TGGTTGACCT TCAATTTCAA CAGCCTGACT ATGGATGGGA
  CTCTTACAGA CATCTAACTT ATTAAAAACT TCATCAGGGG CTGGAGAGAT GGCTCAGTGG
  TTAAGAGCTC TTCCAGAGGT CTTGAGTTCA TTTCCCAGCA ACCACATGGT GGCTCACAAC
  CATCTATAGT AGTATCTAAT GCCCTCTTCT GGAGTGTCTG AAGCCAGCTA CAGTGTACTT
  ACATTAGATA GATAGATAGA TAGATAGATA GATAGATAGA TAGATAGATA GATAGACAGA
  Y
  AGACAGACAG ACAGACAGAC AGACAGACAC TTCATCAGAA GCTAAGGACA CCAAACTCTA
  CATCCTGGAA TGGTCACAAG TAGTAAGGCC CACACTGCAC AAATCCTGCC CTGACTCTAT
  ACTTTCATGG TTGGTTGGTT GGTTGGTTGG TTAGTTGGTT TCTTTTTTTT AATTTTTCTG
  TCAAAATTAA GTTATAGAGT TCAAGCCCAA GTCCCAGAGT GCCCTGCACT TGAAGGAGTC
  TGTGTAAACA GCCCAAGCCA TGGATCACTG CAAGCCACCA TCTCACCTCT GACCCCTGTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39087780	mCV25159060	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29551173					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100657079 () rs orientation: forward

Symbol	Name	Function Class
Gm57598	predicted gene, 57598	1768 bp upstream
Ocln	occludin	within coordinates
Rr484924	regulatory region 484924	1948 bp distal
Rr484925	regulatory region 484925	1246 bp distal
Rr484926	regulatory region 484926	1222 bp proximal