rs29551454 SNP Detail

Summary

• ID
  rs29551454
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:72778542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTT GTTTTCCAAC AGCTAGCCTT
  R
  TATTTTTCTG GTTCTCTGGC TAAAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39089852	mCV25188342	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss144619271	ENSMUSSNP1433765	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29551454					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:72778542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5831	CpG island 5831	659 bp distal
Cpgi5832	CpG island 5832	41 bp proximal
Gm20554	predicted gene, 20554	1859 bp upstream
Irx2	Iroquois homeobox 2	within coordinates
Rr281620	regulatory region 281620	within coordinates
Tssr120305	transcription start site region 120305	1628 bp downstream
Tssr120306	transcription start site region 120306	1598 bp downstream
Tssr120307	transcription start site region 120307	1575 bp downstream
Tssr123170	transcription start site region 123170	1918 bp upstream
Tssr123171	transcription start site region 123171	1837 bp upstream
Tssr123172	transcription start site region 123172	1816 bp upstream