rs29552013 SNP Detail

Summary

• ID
  rs29552013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:103573460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCGCTGCGC TCCGGTCGCC GCACCGGGGC TCCCCACGCG
  CCGGTAAGAA GCACGCGTGG CCGGACCCGG GGGGTGGGAT GTGCGGGCCT CTGGGACGTC
  Y
  CTTCGGCTCC CCTCGGTTCG GATGGTGGCA TCCCTGGTGC GCCGAGGGCG GGGAGCGCGA
  GCTGCTTGCA GTTTAATCCT GGCTGAGACC CCCGAGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45833081	mCV24430825	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss148945515	ENSMUSSNP940763	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321632963	CHEV_5_103854613	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs29552013					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:103573460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16135	CpG island 16135	within coordinates
Ptpn13	protein tyrosine phosphatase, non-receptor type 13	within coordinates
Rr615857	regulatory region 615857	1368 bp distal
Rr615858	regulatory region 615858	83 bp distal
Rr615859	regulatory region 615859	within coordinates
Tssr47557	transcription start site region 47557	397 bp downstream
Tssr47558	transcription start site region 47558	363 bp downstream
Tssr47559	transcription start site region 47559	335 bp downstream
Tssr52160	transcription start site region 52160	126 bp downstream
Tssr52161	transcription start site region 52161	154 bp downstream