rs29552622 SNP Detail

Summary

• ID
  rs29552622
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:116726086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTTTGAGATT GTCAATTCCC AATGTCACCT ATACCAACCA AAGGCTATTA TTATCTAAGG
  TGTTTAGAGA TCCAGATACT TCTTCATTGT GCCTCCCCCA GCAGCACCCC CCACCCGCCC
  CCAACTCAAT AACCAGAAGG GAAAAGAGTT AGCCTTCTGT GCTGGTTAAT CTCAGCTGTT
  AACTTGGTAA GAGCTAGAGC CACTAGGGTG TTGGGCTTCC GGTCATGAAT GAAGGAAGGG
  ATCTTGATTA GGATAATTGA AGAGGAAAAA CCACCACTGT GGGTGGCGCC ATTCCCCGGG
  S
  TTGGGGCTGG GGAAGAAAAT GGCTGTAGCT GAATGTTATC ATTCTGTTCT TGGCTATGGA
  TTCAATGTGA TCAGCTTCCT GAAGCTCCTA CCCTAATGAC CTCCTACCAT GTTGTTTTAC
  ACGCTGAAAG TCAGGCTGAA ATTAACCCTT TCCCTCTTGA GATGCTTTTC AGGTTTTTTT
  TTTTTTGTTT TGTTTTGTTT TGTTTTTTAG AGTATCAGGA AGAGAAAGAA ACTAAGCTAC
  TTACATGGAT GTGGAACTCT GGAGTCATCC CTACTTGATC CGATGTGTAT TAATTTCAAA
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45833769	mCV24902888	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29552622					SNP	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:116726086 () rs orientation: forward

Symbol	Name	Function Class
Rr618510	regulatory region 618510	772 bp proximal
Rr618511	regulatory region 618511	1832 bp proximal
Srrm4	serine/arginine repetitive matrix 4	Intron