rs29552987 SNP Detail

Summary

• ID
  rs29552987
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114953618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA ATATTTGAAT AGAGTAAAAC
  M
  TTATTGAGCT TTGTCTTTGT CCTTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39089396	mCV24434080	ABI	CRAMUS_MOUSE	f	SNP	A	C				A		A
ss62050131	NES17145385	PERLEGEN	MM_PANEL2	f	SNP		C	C	A	A		A		C	C	C	C	C	C	A
ss145319473	ENSMUSSNP3716165	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29552987					SNP	A	C	C	A	A	A	A	A	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62050131	NES17145385	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114953618 () rs orientation: forward

Symbol	Name	Function Class
Gm34790	predicted gene, 34790	within coordinates
Mocs2	molybdenum cofactor synthesis 2	1089 bp upstream
Rr404003	regulatory region 404003	997 bp upstream
Rr486709	regulatory region 486709	475 bp proximal
Rr486710	regulatory region 486710	1009 bp proximal
Rr486711	regulatory region 486711	1011 bp proximal
Rr486712	regulatory region 486712	1132 bp proximal
Rr486713	regulatory region 486713	1179 bp proximal
Rr486714	regulatory region 486714	1235 bp proximal
Tssr121205	transcription start site region 121205	1150 bp upstream