rs29553326 SNP Detail

Summary

• ID
  rs29553326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:145814530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCGAGAATG AGTGATGCAG AGTACCAGTG AGCCCACTTC CTGAATAGAA TGGCTGGGTC
  AATCAGTCAG TCACTCAGCT TCCTGAGAGC CTGTGTTCCT CATCAAAAAA AATGTCAAAA
  ATCTGGGTTG GAGAGATGGC TCAGAGGTTA AGAACACTCA CTGGCTGCTC TTTCAGAGGT
  CCTGAGTTTA ATTACCAGCA ACCACATGGT GGCTCCCATC TATAATGGGA TCTGATGCCC
  TCTTCTGGCA CATAGATCAT ATATGTATGT ATATATATAT ATATATATAT ATATATATAA
  Y
  ACACAAAATA AATAAATCTT TTTTTAAAAT GTCAACAATC ATACAGTAAA ATCGCGGTGA
  GCATTGCATG AACTTCAGTA CCTGGTGCCA ATGTCTCAGT GTGCTGAGCA TTGTTTTGTT
  TGTAGATCAG GGCAGACTTC ATTGAGCTGT TTCCCACCAA ACAACCTTTC TTCACTTCTC
  CTCTCAGACC AGTCAAGTAC TCAGTAAGTG AACTCAAGAG ACAGTGAAGA GTTTCTCTCT
  GTCAAGGAGC CCTGAATTTG TGACTGCTCT CTAAGTTGGA GTTCATCTGA TGGGTTCAGG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45335001	mCV22531068	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29553326					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:145814530 () rs orientation: forward

Symbol	Name	Function Class
Cfap61	cilia and flagella associated protein 61	Intron
Rr374013	regulatory region 374013	238 bp downstream
Rr566617	regulatory region 566617	1489 bp distal
Rr566618	regulatory region 566618	578 bp distal