rs29553784 SNP Detail

Summary

• ID
  rs29553784
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166901241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTTGTTT GCTTCTACCT
  TCCTGCTGCT GGGATTAAAG AAGCCACCTG ACTAGGGTCT TTTTTTTTTT TCTGGTGGAG
  ATAGGCTCTA ATCCTGTAAC CCAATGTGGC CTCTAATTCT TAAAATATTT ATTATTATAA
  ACACTATTAT CATTTTATGT ATATGAATGC TTTGACCCAC AGGTGTCTAT GCACGTTAAT
  K
  CTCATAAAGT GTTAATATCT TAATATCATT AACTTAAGAA ACTAGAGCAT TACATTTTAC
  TGAGTTGCCA TTAAATTAGA AAAAAAAAAA TTTCAAGACT CAGTCGATGA GGGCACTTGC
  TAACCAACCC TGACAATGTC AGTTCAGTCC TCAAGACCAC ATGATAGAAG GAAAAAACCC
  AACTCTTAGG AGAAGTCTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45335685	mCV22943186	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29553784					SNP	G	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166901241 () rs orientation: forward

Symbol	Name	Function Class
Gm75600	predicted gene, 75600	1231 bp upstream
Rr570435	regulatory region 570435	605 bp distal
Rr570436	regulatory region 570436	101 bp proximal
Rr570437	regulatory region 570437	1105 bp proximal
Rr570438	regulatory region 570438	1242 bp proximal
Tssr21785	transcription start site region 21785	429 bp downstream
Tssr21786	transcription start site region 21786	1195 bp upstream
Tssr21787	transcription start site region 21787	1949 bp upstream
Tssr21788	transcription start site region 21788	1970 bp upstream
Tssr27731	transcription start site region 27731	733 bp downstream
Tssr27732	transcription start site region 27732	781 bp downstream
Tssr27733	transcription start site region 27733	817 bp downstream
Tssr27734	transcription start site region 27734	1096 bp downstream
Tssr27735	transcription start site region 27735	1126 bp downstream
Tssr27736	transcription start site region 27736	1510 bp downstream
Tssr27737	transcription start site region 27737	1517 bp downstream
Tssr27738	transcription start site region 27738	1528 bp downstream
Tssr27739	transcription start site region 27739	1748 bp downstream
Znfx1	zinc finger, NFX1-type containing 1	within coordinates