rs29553858 SNP Detail

Summary

• ID
  rs29553858
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66590500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA TGAAGTCTGA GTAACTGGAG
  Y
  TCATTTCGCA AGAGACCCCA ACAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39586206	mCV23204014	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		T
ss50450336	NES13440889	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	T		C	T	T	T		C	T	C	C		C
ss147332518	ENSMUSSNP492483	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
ss325661075	CHEV_18_66617083	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29553858					SNP	T	T	C	T	C	T	T	C	C	T	T	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50450336	NES13440889	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66590500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10160	CpG island 10160	765 bp proximal
Pmaip1	phorbol-12-myristate-13-acetate-induced protein 1	1175 bp upstream
Rr405709	regulatory region 405709	990 bp upstream
Rr539737	regulatory region 539737	614 bp proximal
Rr539738	regulatory region 539738	962 bp proximal
Rr539739	regulatory region 539739	1016 bp proximal
Rr539740	regulatory region 539740	1175 bp proximal
Tssr151705	transcription start site region 151705	1158 bp upstream