rs29555380 SNP Detail

Summary

• ID
  rs29555380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118735152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGG ATGGAGGGGA ACCTTTGGCT
  Y
  TTCTAGAAAT GCTCAGTATG GATGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45334635	mCV22544980	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147316916	ENSMUSSNP4341954	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C		T
ss320472582	CHEV_2_118730407	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29555380					SNP	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118735152 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Cpgi12098	CpG island 12098	1528 bp distal
Rr563370	regulatory region 563370	905 bp distal
Rr563374	regulatory region 563374	1625 bp distal
Rr563375	regulatory region 563375	780 bp proximal