rs29555544 SNP Detail

Summary

• ID
  rs29555544
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129144182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCCATAA GGTTAGGAAT TTTGGCTCAC CACTCTAGAT
  AGCTTTTAAT GCTGTGCTTG AAAAATAGAA GACTTTCAGT AATTAATAGC TTGTTGAAGG
  R
  ATTCATGAAT GAAGCTACTG CCCTACTCAG TAGATAATAC TTTCATTTGA TTCTCACAGA
  GAAATACAGA CACCCACATA TACTTTAGGA CAGGAGGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45337185	mCV23184306	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss147586246	ENSMUSSNP1888562	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29555544					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129144182 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	1701 bp distal
Tssr20111	transcription start site region 20111	1818 bp downstream
Tssr26206	transcription start site region 26206	2000 bp upstream
Tssr26207	transcription start site region 26207	1922 bp upstream
Tssr26208	transcription start site region 26208	1694 bp upstream
Tssr26209	transcription start site region 26209	1613 bp upstream
Tssr26210	transcription start site region 26210	1496 bp upstream
Tssr26211	transcription start site region 26211	1359 bp upstream
Tssr26212	transcription start site region 26212	1316 bp upstream
Tssr26213	transcription start site region 26213	713 bp upstream
Tssr26214	transcription start site region 26214	693 bp downstream
Tssr26215	transcription start site region 26215	716 bp downstream
Tssr26216	transcription start site region 26216	1502 bp downstream
Tssr26217	transcription start site region 26217	1532 bp downstream