rs29555562 SNP Detail

Summary

• ID
  rs29555562
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:170189008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTT GGCAATTCCA TCTTAATGGA
  Y
  TCACAGTCCA ATTCAGTTCT CTGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45337302	mCV25317565	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss148295635	ENSMUSSNP4190898	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320614875	CHEV_2_170172588	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29555562					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170189008 () rs orientation: forward

Symbol	Name	Function Class
Bcas1	brain enriched myelin associated protein 1	mRNA-UTR
Rr571416	regulatory region 571416	815 bp distal
Rr571417	regulatory region 571417	59 bp proximal
Rr571418	regulatory region 571418	275 bp proximal
Rr571419	regulatory region 571419	501 bp proximal