rs29555687 SNP Detail

Summary

• ID
  rs29555687
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:163443980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAACTACTGC TGTCTCGAGA CAACATTGTG AGCCCCAGAG CAGGAAACAA GTAGTTTCTG
  AGTCGGGGTC CAGGGCAAGA ATCGTTATTC ACGAAGAAAT AGAGGCGAAG AGGCTAGTGC
  ACTTGGCCAA AGCGGCTCAG CTGATGGCAT ACTGACACAG GCAGCCAGTC CAGACATCAG
  CTGAGGACAG AGTAGTTCTG CAAATGATAA GCCTGAGGTC TAGGTCTGAA GCTGGTTTCT
  GCATTGATTT GCCGCTTCTC TAGAGGTCAC AGCAGGCAGG GGGATTGAAA AAAAAAAATA
  W
  ATATATATAT ATAAAATGAA AATAAATAAA TAAAAAGACA ATTTAATGAG AAAATGATGT
  AGAACACTAG GCATATGGCA GTGTGTTCCA GCTTCCCTCC CCGAGGCCTC AGTTTCCCCA
  CCCGAAACCC AACTCAGCTG CACAGCCGGG GCCACCAGGT GGTGTCAAGC CCCAAGTCAG
  CACTACAAAG TTCACTCATG CGCATTCCCG GATGGGCGCC GCCTACACGC GGCTCGAGCG
  TCACTTCCGG CGCGAGGGCC GGGCCGGCCG GCCGGGGAGT GCGGGTCTGT TCTGCGCGCG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J
ss45335127	mCV23585548	ABI	CRAMUS_MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J
rs29555687					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163443980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12638	CpG island 12638	within coordinates
Rr397464	regulatory region 397464	479 bp upstream
Rr569433	regulatory region 569433	627 bp distal
Rr569434	regulatory region 569434	within coordinates
Rr569435	regulatory region 569435	27 bp distal
Rr569436	regulatory region 569436	148 bp proximal
Rr569437	regulatory region 569437	273 bp proximal
Tssr21475	transcription start site region 21475	234 bp upstream
Tssr21476	transcription start site region 21476	271 bp upstream
Ttpal	tocopherol (alpha) transfer protein-like	254 bp upstream