rs29556030 SNP Detail

Summary

• ID
  rs29556030
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121266506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAA GTTGATTAGA GGGGCGGGGG
  Y
  AAGGGGGGTT GAGATGGAGT CTATT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45337702	mCV22586075	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147386069	ENSMUSSNP7182645	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320483154	CHEV_2_121261761	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29556030					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121266506 () rs orientation: forward

Symbol	Name	Function Class
Pdia3	protein disulfide isomerase associated 3	within coordinates
Rr563821	regulatory region 563821	884 bp distal
Rr563822	regulatory region 563822	963 bp distal
Tssr19767	transcription start site region 19767	103 bp downstream
Tssr19768	transcription start site region 19768	330 bp upstream
Tssr19769	transcription start site region 19769	1582 bp upstream
Tssr19770	transcription start site region 19770	1880 bp upstream