rs29556184 SNP Detail

Summary

• ID
  rs29556184
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603357 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCAGCTCG CCATGGCAGT
  GCCCATTGGT ACACACTAAC CTCGGTGGAA AAATAACCAT TCCCTGCCTC CTAGAAAGGA
  CTCATTCTTA GCTTTAGGGG GGTTCCTGTC ACTGAATCGA GTCGCTGCCC TGGATGCAGG
  GCTGGCCTGG GCGACGCTCC AGGGATGAGG AGCTGAGAAC CCCAGTCTAA TAATGTCCAT
  S
  GACACCTCCT TATCCCTCTA ACGTACTATG TCTTTTGATT TAGCATGCCT TCTGTAGACC
  TTCCAAAGAG CCCCACACTG GCACCGTCAC CCCTAGGAAG GCAGGTGATG GTTGATGTAG
  CCCAATACTG CATCTTGTTA ATCTGTTCTA ACTCTGAGTA GAGTGTGGGT TTAAGATAAC
  ACCGATTAAT GTATCGCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss39588050	mCV23909300	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss147616984	ENSMUSSNP4574227	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs29556184					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603357 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	1228 bp proximal
Mbp	myelin basic protein	mRNA-UTR
Rr541827	regulatory region 541827	1097 bp distal
Tssr152152	transcription start site region 152152	1107 bp downstream
Tssr152153	transcription start site region 152153	983 bp downstream
Tssr152154	transcription start site region 152154	960 bp downstream
Tssr152155	transcription start site region 152155	924 bp downstream
Tssr152156	transcription start site region 152156	855 bp downstream
Tssr152157	transcription start site region 152157	777 bp downstream
Tssr152158	transcription start site region 152158	740 bp downstream
Tssr152159	transcription start site region 152159	716 bp downstream
Tssr152160	transcription start site region 152160	670 bp downstream
Tssr152161	transcription start site region 152161	654 bp downstream
Tssr152162	transcription start site region 152162	633 bp downstream
Tssr152163	transcription start site region 152163	616 bp downstream
Tssr152164	transcription start site region 152164	571 bp downstream
Tssr152165	transcription start site region 152165	498 bp downstream
Tssr152166	transcription start site region 152166	462 bp downstream
Tssr152167	transcription start site region 152167	430 bp downstream
Tssr152168	transcription start site region 152168	401 bp downstream
Tssr152169	transcription start site region 152169	348 bp downstream
Tssr152170	transcription start site region 152170	240 bp downstream
Tssr152171	transcription start site region 152171	196 bp downstream
Tssr152172	transcription start site region 152172	93 bp downstream
Tssr152173	transcription start site region 152173	78 bp downstream
Tssr152174	transcription start site region 152174	44 bp downstream
Tssr152175	transcription start site region 152175	9 bp downstream
Tssr152176	transcription start site region 152176	166 bp upstream
Tssr152177	transcription start site region 152177	334 bp upstream
Tssr154083	transcription start site region 154083	1002 bp upstream
Tssr154084	transcription start site region 154084	948 bp upstream
Tssr154085	transcription start site region 154085	691 bp upstream
Tssr154086	transcription start site region 154086	145 bp upstream
Tssr154087	transcription start site region 154087	51 bp downstream
Tssr154088	transcription start site region 154088	91 bp downstream
Tssr154089	transcription start site region 154089	202 bp downstream
Tssr154090	transcription start site region 154090	274 bp downstream