rs29556424 SNP Detail

Summary

• ID
  rs29556424
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118713514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG GCTCCCTAGG GAGTGACACT
  R
  GGCTAAGGCA GCTATATGGG GGTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45336897	mCV22801914	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147316226	ENSMUSSNP3260247	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320472447	CHEV_2_118708769	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29556424					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118713514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	241 bp proximal
Ivd	isovaleryl coenzyme A dehydrogenase	126 bp downstream
Rr397218	regulatory region 397218	within coordinates
Rr397219	regulatory region 397219	503 bp upstream
Rr563358	regulatory region 563358	1716 bp distal
Rr563359	regulatory region 563359	within coordinates
Rr563360	regulatory region 563360	537 bp proximal