rs29556521 SNP Detail

Summary

• ID
  rs29556521
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34756651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTCTCTCG GATGGACCAT GGCTCTGTTG GGCCAGTACT
  CAGCAGCTTG TGCTCTGGAA ATACAGAAGG CTCAGAAACA ACCTCGGAGC TAGTCCTCAG
  Y
  CCCAGAACTG CTAAACGCCT CATATAAAAT AACAACCCAG GCAGGACTAC TGTGGAGTAG
  TAATCCCGGC TCTCAGGATG CAGAGACTAG CCTGGTCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39587667	mCV22875778	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss49256699	NES12717607	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	C		C	T	C	C	C	C	C	C	T
ss146941858	ENSMUSSNP3564511	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29556521					SNP	C	T	T	C	T	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49256699	NES12717607	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34756651 () rs orientation: forward

Symbol	Name	Function Class
Brd8	bromodomain containing 8	within coordinates
Cpgi9821	CpG island 9821	486 bp proximal
Kif20a	kinesin family member 20A	1026 bp upstream
Rr352687	regulatory region 352687	within coordinates
Rr370355	regulatory region 370355	380 bp upstream
Rr370356	regulatory region 370356	908 bp upstream
Rr405583	regulatory region 405583	1128 bp upstream
Tssr5275	transcription start site region 5275	1002 bp downstream
Tssr150465	transcription start site region 150465	1023 bp upstream
Tssr150466	transcription start site region 150466	1036 bp upstream
Tssr150467	transcription start site region 150467	1357 bp upstream
Tssr150468	transcription start site region 150468	1411 bp upstream
Tssr150469	transcription start site region 150469	1444 bp upstream
Tssr152814	transcription start site region 152814	964 bp downstream
Tssr152815	transcription start site region 152815	1174 bp downstream
Tssr152816	transcription start site region 152816	1224 bp downstream