rs29557282 SNP Detail

Summary

• ID
  rs29557282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:18762525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTACTTTGTG AATCTCAACA GAGAAATTGT CTCCATTGTG
  TTGGCCTGCG GGCAGGTCTA TGGGGCATTC TCTTAATTGC TGATTGATGA AGTAATCAGT
  Y
  CACTGTGGGT GGTGCCATTC CTAAGCAGGT AGGTCTGAGT TATGTTAAAA AAAATTATTG
  CCAGGCAGTG GTGGCACACA CCTTTTATTC CAGCACTTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45337220	mCV23542729	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss146310357	ENSMUSSNP2222622	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29557282					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:18762525 () rs orientation: forward

Symbol	Name	Function Class
Gm3363	predicted gene 3363	within coordinates
Gm13333	predicted gene 13333	1270 bp upstream
Rr552354	regulatory region 552354	1574 bp distal
Rr552355	regulatory region 552355	1251 bp distal
Rr552356	regulatory region 552356	1354 bp distal