rs29557545 SNP Detail

Summary

• ID
  rs29557545
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:5349163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGCCAAA ACAAGTCATG
  TGACCAGCCT AAATGGAAAG AGGAAGCACA CTTCCTTTCT GGAAAAACTA CTTGTTGGTG
  GTGTTGTTCT TATATCAGTC ATGGGCAGAG CAGATGACAA TCCCTTGTTC ATCCTAGCTT
  GATGCCTGGT ATGGTGGCCA AAGCTGTTTT GTGCCTAGGA CACCTAAAAT CCAATCAAGT
  S
  AAATCAAATC CAGGTAGCAC AGCTCAGGAG GAGGAAGACA GATATAGACC TGCCAACCAC
  CATGCCACCC ACAAACCTGC ACTCCAGAGC AAGGCACAGG CTGGACCATA GACACCCACT
  TGCAGCCACA CCACACAGAG CAGATGAAGG ATGGCACCCA GGGACCCACC AGCCACATGG
  CCAACCTGAG AAGGAGCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39589452	mCV25013674	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	G	G
ss146577975	ENSMUSSNP11751	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G		G
ss325518183	CHEV_18_5349161	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29557545					SNP	C	C	G	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:5349163 () rs orientation: forward

Symbol	Name	Function Class
Gm50064	predicted gene, 50064	within coordinates
Gm52372	predicted gene, 52372	14 bp downstream
Gm58537	predicted gene, 58537	within coordinates
Rr370337	regulatory region 370337	1838 bp downstream