rs29557728 SNP Detail

Summary

• ID
  rs29557728
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:38764835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCACAAAA GAACAGGATG TTGTTGATTT GTCACCAAAC
  CACAGAGAGG AAATGATTGT AAATTTCCTT TAAACATCCC CACCGCGCTC CGGCCGCCCC
  M
  GCTTCCGCCT CCGCCGCCCC CGCCGGGCCC AGCGCAGCGG GGCCTCTGCG CTCCTGTGGC
  CGCTTCGACT CCTCCGGCTC TCCGGCCGGG GCTCCAGGC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss39589056	mCV23939980	ABI	CRAMUS_MOUSE	f	SNP	A	C	A
ss146968981	ENSMUSSNP6240533	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29557728					SNP	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:38764835 () rs orientation: forward

Symbol	Name	Function Class
9630014M24Rik	RIKEN cDNA 9630014M24 gene	within coordinates
Arhgap26	Rho GTPase activating protein 26	within coordinates
Cpgi9980	CpG island 9980	within coordinates
Gm58701	predicted gene, 58701	311 bp downstream
Rr393575	regulatory region 393575	within coordinates
Rr536561	regulatory region 536561	within coordinates
Tssr150807	transcription start site region 150807	66 bp downstream
Tssr150808	transcription start site region 150808	662 bp upstream
Tssr153047	transcription start site region 153047	234 bp upstream
Tssr153048	transcription start site region 153048	202 bp upstream
Tssr153049	transcription start site region 153049	163 bp upstream