rs29557833 SNP Detail

Summary

• ID
  rs29557833
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102488158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGTGATA GGTTTGAGTC CCAATGTCCA GCAGAGGAAA
  AGAAGGTTTT GCCTTTTAGG TGGCCACGGG GTCAGCAGGT GGAGGACCTG TAGGTGTCTG
  S
  TGTGTCCCAG TCCTCGAGAT AATAAAAGCT GAGCAGAACT TGTCATTATT ATGCAAAGCT
  GGGCAGGAGG CTTGGACTCT CCCTCGCAGA AGGCAGAAG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45337024	mCV24398111	ABI	CRAMUS_MOUSE	f	SNP	C	G	C
ss147119743	ENSMUSSNP3889898	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320439890	CHEV_2_102497970	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29557833					SNP	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102488158 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	781 bp proximal
Gm57687	predicted gene, 57687	1887 bp upstream
Rr561712	regulatory region 561712	1148 bp distal
Rr561713	regulatory region 561713	356 bp proximal
Rr561714	regulatory region 561714	978 bp proximal
Rr561715	regulatory region 561715	978 bp proximal
Rr561716	regulatory region 561716	1479 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	846 bp upstream
Tssr19098	transcription start site region 19098	415 bp upstream
Tssr19099	transcription start site region 19099	467 bp upstream
Tssr19100	transcription start site region 19100	763 bp upstream
Tssr19101	transcription start site region 19101	827 bp upstream
Tssr19102	transcription start site region 19102	864 bp upstream
Tssr19103	transcription start site region 19103	913 bp upstream
Tssr19104	transcription start site region 19104	939 bp upstream
Tssr19105	transcription start site region 19105	1005 bp upstream
Tssr19106	transcription start site region 19106	1030 bp upstream
Tssr19107	transcription start site region 19107	1041 bp upstream
Tssr19108	transcription start site region 19108	1084 bp upstream
Tssr19109	transcription start site region 19109	1120 bp upstream
Tssr19110	transcription start site region 19110	1400 bp upstream