rs29557958 SNP Detail

Summary

• ID
  rs29557958
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTAGGAG AGGGGGAGAG
  TGAGAAGAGG CAGAGGGTGA AATAGTTGCA CAGCTTGGAA CTTGAGACTT CCTCATTGGC
  ATCTTCCTGG GGGAATTCCT GAAGGAAGCT CTCCCACAGT TCTGCGTGGG TTTTTTCTGT
  AGTTGTCTGT CCCCTGGCTT CCCCCTCTGG TCCAGTTTCA ATCTATTTGT AACCCTACCA
  R
  CTGTAAGAAC CCCCTAGACA GAAACTGCCT GTCAAGCATT GTTGCATTTA CTCTCAGCCA
  CTTTTAGAAT CCTTCTAGGA CACTGATGTT TAAGCTAATC TCCCCTTTCC ACTGGGATCC
  TAGATACTTG CTCATCTGAT GAGAGCAATA TATCTGGATT TTAAAAACAT TTCCAGATTT
  AATATACAGC CAAGCTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45334954	mCV22628658	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss147514362	ENSMUSSNP349364	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss320498583	CHEV_2_126760161	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29557958					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776345 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1021 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	1338 bp distal
Rr564423	regulatory region 564423	1349 bp distal
Rr564424	regulatory region 564424	1201 bp distal
Rr564425	regulatory region 564425	700 bp distal
Sppl2a	signal peptide peptidase like 2A	1190 bp upstream
Tssr26085	transcription start site region 26085	1335 bp upstream
Tssr26086	transcription start site region 26086	1292 bp upstream
Tssr26087	transcription start site region 26087	1261 bp upstream
Tssr26088	transcription start site region 26088	1198 bp upstream
Tssr26089	transcription start site region 26089	1184 bp upstream
Tssr26090	transcription start site region 26090	545 bp upstream