rs29558778 SNP Detail

Summary

• ID
  rs29558778
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24599589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTGGTGCAC TTATTTCGGT TCGGAATCCG GGGTGGCCCA
  GTTCCAGGAT GGTCGCTACA ATCCCTGCGC TTCCAGACGT TCTCTGCCGC CAGGTAAAAA
  M
  ACAAGAGCAA CTTGGAGTGT GGGCCATTGA CCACCGTCCG ACATCGCGCG GGGCCCGCCG
  GGATATGTAG TTCCGGGCTC GCGCGGGGCT TGCTGGGAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss45833941	mCV25442923	ABI	CRAMUS_MOUSE	f	SNP		C	C				A
ss47616003	NES10289287	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	A	A	A		A	A	A
ss148093000	ENSMUSSNP6220580	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				A
ss321495655	CHEV_5_23900409	CHEVERUD	SCREENING_POP	f	SNP									A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs29558778					SNP	C	C	C	C	C	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47616003	NES10289287	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24599589 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	within coordinates
Rr112283	regulatory region 112283	989 bp distal
Rr112284	regulatory region 112284	1612 bp proximal
Rr124925	regulatory region 124925	within coordinates
Rr398998	regulatory region 398998	882 bp downstream
Rr398999	regulatory region 398999	121 bp downstream
Tssr45411	transcription start site region 45411	927 bp downstream
Tssr45412	transcription start site region 45412	161 bp downstream
Tssr50319	transcription start site region 50319	1893 bp upstream