rs29559488 SNP Detail

Summary

• ID
  rs29559488
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115115947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTT GTACAAACTA GATAAAAACT
  R
  TTGGGTGACC ACTTCTGCAG CCCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45834441	mCV24915498	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss149119815	ENSMUSSNP6292039	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss321653995	CHEV_5_115427897	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29559488					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115115947 () rs orientation: forward

Symbol	Name	Function Class
1810017P11Rik	RIKEN cDNA 1810017P11 gene	1875 bp downstream
Cpgi16346	CpG island 16346	1362 bp proximal
Gm71622	predicted gene, 71622	within coordinates
Gm71625	predicted gene, 71625	within coordinates
Hnf1aos1	HNF1 homeobox A, opposite strand 1	within coordinates
Rr618085	regulatory region 618085	1013 bp proximal
Rr618086	regulatory region 618086	1119 bp proximal
Rr618087	regulatory region 618087	1501 bp proximal