rs29559659 SNP Detail

Summary

• ID
  rs29559659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74406591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGA TTTACTATAA TGTACATATG
  R
  TAGTATTTTT TAACAGATGT AAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45337643	mCV25093483	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss146763372	ENSMUSSNP3334497	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss320348068	CHEV_2_74414304	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29559659					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74406591 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11782	CpG island 11782			1871 bp proximal
Lnpk	lunapark, ER junction formation factor			Intron
				Noncoding-Transcript-Variant
Rr559317	regulatory region 559317			1661 bp proximal
Rr559318	regulatory region 559318			1966 bp proximal
Tssr24609	transcription start site region 24609			347 bp downstream