rs29559694 SNP Detail

Summary

• ID
  rs29559694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:35908513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCATTTTAT TTTTGTCAAA ATTATAGCGA AAATAAAAGC
  AGAAGTCAGG TTTTTCAGAC TTTTTGTGTG GCATATAGTT TACATTAAAT GATAGGATTA
  R
  TGGATATAGA TAAGACCATT CCTGTCCTGT CCTCAATCCA GAGTATCTGT ATTGGAATCC
  CAAGACTTGC TTGGTCTGTA TTATCAGCCA GTCTTGGTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39589072	mCV23294444	ABI	CRAMUS_MOUSE	f	SNP		G				A		G
ss49278064	NES12722452	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	A		A	G	A	A	A	A	A	A	G
ss146946414	ENSMUSSNP4830287	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29559694					SNP	A	G	G	A	A	A	A	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49278064	NES12722452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35908513 () rs orientation: forward

Symbol	Name	Function Class
Rr535949	regulatory region 535949	1021 bp proximal
Tssr150562	transcription start site region 150562	1655 bp downstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	Intron