rs29559900 SNP Detail

Summary

• ID
  rs29559900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144368364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATAACTAG CAGGGCAGAA ACCTTATGGG TCTTTTCTTT
  GAGGTGGGGA GGAGTCCTCT TAATCCAGTA TTTGCAACTT GCACTGTAGC TTCAACGATT
  R
  TGGCTACATT ATTATTCAAT TATAATGTAC ATATTCATCT CACTTTTATA ATCAACATTT
  TGCATCCTCA TTTCGCCCCC CGCTCCCCCG AGACAGGGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45337045	mCV22517488	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G	A
ss147798063	ENSMUSSNP2278681	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29559900					SNP	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144368364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	658 bp proximal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	within coordinates
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	1301 bp upstream
Rr566471	regulatory region 566471	293 bp distal
Rr566472	regulatory region 566472	415 bp proximal
Rr566473	regulatory region 566473	944 bp proximal
Rr566474	regulatory region 566474	1315 bp proximal
Tssr20540	transcription start site region 20540	1071 bp upstream
Tssr20541	transcription start site region 20541	1294 bp upstream
Tssr20542	transcription start site region 20542	1347 bp upstream
Tssr26607	transcription start site region 26607	897 bp downstream
Tssr26608	transcription start site region 26608	981 bp downstream
Tssr26609	transcription start site region 26609	995 bp downstream
Tssr26610	transcription start site region 26610	1057 bp downstream
Tssr26611	transcription start site region 26611	1082 bp downstream