rs29560784 SNP Detail

Summary

• ID
  rs29560784
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76373777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT GCTCTGGGAT GCCCTCACAT
  S
  TGAGGAGAGA GCATGCTCCA CTCTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39588595	mCV25200605	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss325699771	CHEV_18_76400360	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29560784					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76373777 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	131 bp proximal
Rr540992	regulatory region 540992	384 bp proximal
Rr540993	regulatory region 540993	1006 bp proximal
Smad2	SMAD family member 2	874 bp upstream
Tssr151989	transcription start site region 151989	597 bp upstream
Tssr151990	transcription start site region 151990	626 bp upstream
Tssr151991	transcription start site region 151991	714 bp upstream
Tssr151992	transcription start site region 151992	954 bp upstream
Tssr151993	transcription start site region 151993	1186 bp upstream
Tssr151994	transcription start site region 151994	1429 bp upstream