rs29561337 SNP Detail

Summary

• ID
  rs29561337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:144371160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCCCATCTA TACCATTGAC TTCCCATCAC CGAGGTTAAT
  GCATCCGGTC TGTGCCATTG ATCTGTGCCG CTGGCCTTCT CTAGTCTCCA GCTTGCAGGA
  R
  ACGTACAAGA ATTCTCCCCC CACCTTAATT ACACGGAGCA ATAATCGCAT AATAAGCCTC
  CTTTCTAGTA AGCCAATATA CTAATTGTAA GGCCAAAAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45336184	mCV22517820	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss147798128	ENSMUSSNP5072057	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29561337					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144371160 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12356	CpG island 12356	1129 bp distal
Dzank1	double zinc ribbon and ankyrin repeat domains 1	1826 bp upstream
Polr3f	polymerase (RNA) III (DNA directed) polypeptide F	within coordinates
Rr566472	regulatory region 566472	1853 bp distal
Rr566473	regulatory region 566473	1482 bp distal
Rr566474	regulatory region 566474	850 bp distal
Tssr20540	transcription start site region 20540	1713 bp downstream
Tssr20541	transcription start site region 20541	1467 bp downstream
Tssr20542	transcription start site region 20542	1438 bp downstream
Tssr26607	transcription start site region 26607	1816 bp upstream
Tssr26608	transcription start site region 26608	1808 bp upstream
Tssr26609	transcription start site region 26609	1790 bp upstream
Tssr26610	transcription start site region 26610	1728 bp upstream
Tssr26611	transcription start site region 26611	1703 bp upstream