rs29561446 SNP Detail

Summary

• ID
  rs29561446
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24601396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTTAAT ATATGTGAGT
  ACATTGTAGC TGTCTTCAGA CACACCAGAA GAGGGCATCA GGTCTTATTA CAGATAGTCG
  TGAGCCACCA CGGGGTTGCT GGGAATTGAA CTCAGGACTT CTAGAAAAGC AGTTAGAGCT
  CTTAGCTCTT AACTGCTGAA CCATCTTCCC AGCCCTGTTT TTAGCTTTTT TTTTTTTTTT
  W
  TAAAGATTTA TTTATTATTA TATGTAAGTA CACTGTAGCT GTCCTCAGAC ACTCCAGAAG
  AGGGCGCCAG ATCTTGTTAC GGATGGTTAT GAGCCACCAT GTGGTTGCTG GAATTTGAAC
  TCTGGACCTT CGGAAGAGCA GTCGGGTGCT CTTACCCACT GAGCCATCTC ACCAGCCCTG
  TTTTTAGCTT TTTAAACAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J
ss45834819	mCV25442766	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J
rs29561446					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24601396 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	1642 bp distal
Rr112284	regulatory region 112284	within coordinates
Rr112285	regulatory region 112285	1005 bp proximal
Rr124925	regulatory region 124925	995 bp distal
Rr398999	regulatory region 398999	1928 bp downstream
Tssr45412	transcription start site region 45412	1968 bp downstream