rs29561508 SNP Detail

Summary

• ID
  rs29561508
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:146670129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAAAAGCT TTGTGGGCTC TTACCTCCCA CCAGCAGCAA
  CTCCCCCCCC CATCCCCCCC ATGAACTGGC TCAACAAGTC TGATGCCAGA ACAGGACAGG
  Y
  TATAAACCAG TTGTGAGCCA ATCAAACCTT TATCTCCAAT CTGACTGACC CTAATTACAG
  GAAAGAAAAC TTCAGATACT GAAAACCAAA CCAAACCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45837090	mCV22607130	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss144657771	ENSMUSSNP3854916	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss321713921	CHEV_5_147544895	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29561508					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146670129 () rs orientation: forward

Symbol	Name	Function Class
Gm73162	predicted gene, 73162	210 bp upstream
Rr624745	regulatory region 624745	870 bp proximal
Rr624746	regulatory region 624746	879 bp proximal
Tssr54480	transcription start site region 54480	367 bp upstream
Usp12	ubiquitin specific peptidase 12	1490 bp downstream