rs29561903 SNP Detail

Summary

• ID
  rs29561903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:30803441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGCATA TGCAACAGTG
  TCTCATCCTG AACTTCTTGT CTGGTTACTC TGGGAGGGGT ACTTGACTCT GGACCTTACA
  CGTGGTAGGC TCTACGTGCT TTTTTGCCAA TAAATCCTCC TGTGTACCAG ACTTCAGAGA
  CAGCTGTTTG ATGAGTGCTT ACAGCATGAT ATAATAAATT AGAATTCACT TTCTAATGTG
  R
  CTCTAGAGAC AAAGACTGCT CTGCTAGTGA CATCATGTCG GGCTAGTGAC ACCAATGTCA
  TTAGTAATGT TTATGTCAGG CAAGTATCCT TGGCCTGAAC CTATGGGAAA ATAGCCCAGA
  GTCCTACTGT AGTCGATAAG AACTGTCTCC CATGGGGAAT AGGGGTGGGG AGGCCTGGCA
  GATGGTGTCC CTTTAGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45837394	mCV25292965	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss148186536	ENSMUSSNP816220	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29561903					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:30803441 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15682	CpG island 15682	1636 bp proximal
D5Mit389	DNA Segment, Chr 5 Massachusetts Institute of Technology 389	1091 bp proximal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Mir5625	microRNA 5625	1839 bp upstream
Slc35f6	solute carrier family 35, member F6	1836 bp upstream
Tssr45603	transcription start site region 45603	1824 bp upstream
Tssr45604	transcription start site region 45604	1838 bp upstream
Tssr45605	transcription start site region 45605	1908 bp upstream