rs29561996 SNP Detail

Summary

• ID
  rs29561996
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121991015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCA CAAACATACT CACACATAAC
  W
  CAAGATTAAA CATTTAAAAA TTAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45338288	mCV24435050	ABI	CRAMUS_MOUSE	f	SNP	A	T	A
ss147410348	ENSMUSSNP1883332	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320487271	CHEV_2_121986270	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29561996					SNP	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121991015 () rs orientation: forward

Symbol	Name	Function Class
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr373780	regulatory region 373780	within coordinates
Rr563916	regulatory region 563916	1694 bp distal
Rr563917	regulatory region 563917	76 bp proximal
Rr563918	regulatory region 563918	177 bp proximal
Rr563919	regulatory region 563919	323 bp proximal
Rr563920	regulatory region 563920	932 bp proximal
Trim69	tripartite motif-containing 69	174 bp upstream
Tssr626	transcription start site region 626	162 bp upstream
Tssr19830	transcription start site region 19830	149 bp upstream
Tssr19831	transcription start site region 19831	167 bp upstream
Tssr19832	transcription start site region 19832	1008 bp upstream