rs29562096 SNP Detail

Summary

• ID
  rs29562096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153005212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTTAAGAG TTTATAAGTT AGCAATATGT ATTTCTGGTG
  TACGTTTCTT CATTCAGCAA ATATTTGAAT GTCCAGTGAC TGCCAGGAAC TAGGTATATG
  R
  CTGTCAGAGG GTCATGGTCC CACCCTCGTG GGCCCACTCT CATTCCAGGA AACCTGCCTG
  GTGCTGCTAA ATGCTGTGAG GGTAGCAAGG TGACGGGAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45337172	mCV22911111	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss147986950	ENSMUSSNP3205101	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29562096					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153005212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	1226 bp distal
Gm75427	predicted gene, 75427	1167 bp upstream
Gm75432	predicted gene, 75432	1783 bp upstream
Rr39415	regulatory region 39415	589 bp proximal
Rr55859	regulatory region 55859	611 bp distal
Rr397404	regulatory region 397404	1851 bp downstream
Tm9sf4	transmembrane 9 superfamily member 4	within coordinates
Tssr20873	transcription start site region 20873	1985 bp downstream
Tssr20874	transcription start site region 20874	1953 bp downstream
Tssr20875	transcription start site region 20875	1739 bp downstream
Tssr20876	transcription start site region 20876	1336 bp downstream
Tssr20877	transcription start site region 20877	1316 bp downstream
Tssr26883	transcription start site region 26883	1821 bp upstream